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Emsign ca update #3497

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Merged
jeromekelleher merged 3 commits into from
Oct 29, 2026
Merged

Emsign ca update #3497

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ac7e91a
Update uv, certifi and PyPI publish action for emSign CA incident
Oct 29, 2026
5a4272d
Update shared tskit-dev workflows to v22
Oct 29, 2026
bab0617
Upgrade locked dependencies (uv sync -U)
Oct 29, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ permissions:

jobs:
Docs:
uses: tskit-dev/.github/.github/workflows/docs.yml@v20
uses: tskit-dev/.github/.github/workflows/docs.yml@v22
with:
pyproject-directory: python
additional-apt-packages: doxygen
2 changes: 1 addition & 1 deletion .github/workflows/lint.yml
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Expand Up @@ -9,6 +9,6 @@ permissions:

jobs:
Lint:
uses: tskit-dev/.github/.github/workflows/lint.yml@v19
uses: tskit-dev/.github/.github/workflows/lint.yml@v22
with:
pyproject-directory: python
2 changes: 1 addition & 1 deletion .github/workflows/release-c.yml
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Expand Up @@ -24,7 +24,7 @@ jobs:
- name: Install uv
uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
with:
version: "0.10.0"
version: "0.13.6"
enable-cache: false
- name: Install system deps
run: |
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12 changes: 6 additions & 6 deletions .github/workflows/tests.yml
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Expand Up @@ -16,22 +16,22 @@ jobs:

packaging:
name: Python packaging
uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v19
uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v22
with:
pyproject-directory: python
cli-test-cmd: tskit --help

test-c:
name: C tests
uses: tskit-dev/.github/.github/workflows/c-tests.yml@v19
uses: tskit-dev/.github/.github/workflows/c-tests.yml@v22
with:
library-directory: c
secrets:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

test-python-c:
name: Python-C tests
uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v19
uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v22
with:
tests: python/tests/test_python_c.py python/tests/test_dict_encoding.py
pyproject-directory: python
Expand All @@ -41,7 +41,7 @@ jobs:

test:
name: Python
uses: tskit-dev/.github/.github/workflows/python-tests.yml@v19
uses: tskit-dev/.github/.github/workflows/python-tests.yml@v22
with:
os: ${{ matrix.os }}
python-version: ${{ matrix.python }}
Expand Down Expand Up @@ -120,7 +120,7 @@ jobs:
uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
with:
python-version: 3.11
version: "0.10.0"
version: "0.13.6"

- name: Install Python dependencies
working-directory: python
Expand Down Expand Up @@ -185,7 +185,7 @@ jobs:
- name: Install uv
uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
with:
version: "0.10.0"
version: "0.13.6"

- name: Install uv deps
run: |
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6 changes: 3 additions & 3 deletions .github/workflows/wheels.yml
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Expand Up @@ -12,7 +12,7 @@ permissions:
jobs:
build-wheels:
if: "!startsWith(github.ref, 'refs/tags/C_')"
uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v21
uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v22
with:
pyproject-directory: python

Expand All @@ -35,11 +35,11 @@ jobs:

- name: Publish distribution to Test PyPI
if: github.event_name == 'push' && github.ref_name == 'test-publish'
uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0
uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3
with:
repository-url: https://test.pypi.org/legacy/
verbose: true

- name: Publish distribution to Production PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0
uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3
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