All pull requests

Pull requests

• cleanup_nested: fix batch poisoning from queries discarded in earlier batches

  #648·shengxinzhuan opened Sep 8, 2026·

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• Process-tree supervision: killing the main process kills the whole tree

  #647·shengxinzhuan opened Sep 7, 2026·

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• Isolate child-tool temporary files from the system /tmp

  #646·shengxinzhuan opened Sep 7, 2026·

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• Add --modules selection and parallel raw-module scheduling; batch BLAST

  #645·shengxinzhuan opened Sep 7, 2026·

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• Fix silent external-tool failures, parsing bugs, and resume-state corruption

  #644·shengxinzhuan opened Sep 7, 2026·

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• Create cleanup_nested_mmseq.pl for speedup by mmseqs

  #590·starskyzheng opened Jul 11, 2025·8 tasks·

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