Issues

• Expose retained producer metadata and boundary states in FASTA headers

  openvax/orfdata#126 · Filter by author iskandr opened on Oct 25, 2026
  1

• Represent unknown source taxon for supplied protein fragments

  openvax/orfdata#125 · Filter by author iskandr opened on Oct 22, 2026

• Keep producer source identity stable across exporter wrappers

  openvax/orfdata#124 · Filter by author iskandr opened on Oct 22, 2026
  1

• Curate host associations and virus-type hierarchy across the viral reference panel

  openvax/orfdata#104 · Filter by author iskandr opened on Oct 16, 2026
  2

• Add Merkel cell polyomavirus and SV40 coding references with distinct cancer evidence

  openvax/orfdata#98 · Filter by author iskandr opened on Oct 15, 2026

• Add HTLV-1 and GDC HIV coding references with source-defined translation paths

  openvax/orfdata#97 · Filter by author iskandr opened on Oct 15, 2026

• Add hepatitis-virus coding catalogues: GDC HBV/HCV and a separate HDV reference

  openvax/orfdata#96 · Filter by author iskandr opened on Oct 15, 2026

• Import CMV coding references with explicit strain and annotation coverage

  openvax/orfdata#95 · Filter by author iskandr opened on Oct 15, 2026

• Import source-qualified EBV and KSHV coding references with supported RNA splice paths

  openvax/orfdata#94 · Filter by author iskandr opened on Oct 15, 2026

• Expand the viral CDS catalogue across GDC HPV types and qualified HPV lineages

  openvax/orfdata#93 · Filter by author iskandr opened on Oct 15, 2026

• Roadmap: publish sequence-qualified viral coding references for cancer RNA and the GDC panel

  openvax/orfdata#91 · Filter by author iskandr opened on Oct 15, 2026
  1

• Support explicit donor or transgene self components in Proteome snapshots

  openvax/orfdata#90 · Filter by author iskandr opened on Oct 15, 2026

• Preserve short source ORFs and apply length thresholds as explicit selection policy

  openvax/orfdata#88 · Filter by author iskandr opened on Oct 15, 2026
  1

• Validate native RibORF sequences and retain provenance before cross-reference placement

  openvax/orfdata#87 · Filter by author iskandr opened on Oct 15, 2026

• Compose same-reference ORF sources without identifier collisions or lost evidence

  openvax/orfdata#71 · Filter by author iskandr opened on Oct 14, 2026
  1

• Preserve all source occurrences and offline provenance in composed proteomes

  openvax/orfdata#68 · Filter by author iskandr opened on Oct 14, 2026
  2

• Link polyprotein and precursor ORFs to their processed protein products

  openvax/orfdata#67 · Filter by author iskandr opened on Oct 13, 2026

• Represent ORFs on source-defined, circular and other non-Ensembl RNAs

  openvax/orfdata#66 · Filter by author iskandr opened on Oct 13, 2026

• Represent recoded translation paths, readthrough and programmed frameshifts

  openvax/orfdata#65 · Filter by author iskandr opened on Oct 13, 2026

• Represent alternative initiation sites and incomplete coding boundaries for Varcode

  openvax/orfdata#64 · Filter by author iskandr opened on Oct 13, 2026
  1

• Import IRES-supported extra ORFs and link their RNA initiation elements

  openvax/orfdata#63 · Filter by author iskandr opened on Oct 13, 2026

• Define transcript-bound ORFs, source identifiers and GENCODE terminology for Varcode

  openvax/orfdata#61 · Filter by author iskandr opened on Oct 13, 2026
  2

• Support explicit mitochondrial genetic codes through ORF binding and modified products

  openvax/orfdata#57 · Filter by author iskandr opened on Oct 13, 2026

• Resolve missing human native RNA counts and deduplicate repeated atlas deposits

  openvax/orfdata#37 · Filter by author iskandr opened on Oct 12, 2026
  1

• Resolve CoPY standard-sequence mismatches and duplicate label-free target rows

  openvax/orfdata#34 · Filter by author iskandr opened on Oct 12, 2026