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lib
lib
 
 
.gitignore
.gitignore
 
 
README.txt
README.txt
 
 
genes.gff
genes.gff
 
 
ngs-00-update-notebooks.ipynb
ngs-00-update-notebooks.ipynb
 
 
ngs-01-install-dropbox.ipynb
ngs-01-install-dropbox.ipynb
 
 
ngs-02-install-screed.ipynb
ngs-02-install-screed.ipynb
 
 
ngs-03-install-khmer.ipynb
ngs-03-install-khmer.ipynb
 
 
ngs-10-blast.ipynb
ngs-10-blast.ipynb
 
 
ngs-11-python-and-graphing.ipynb
ngs-11-python-and-graphing.ipynb
 
 
ngs-12-python-rundown.ipynb
ngs-12-python-rundown.ipynb
 
 
ngs-31-python-and-short-reads.ipynb
ngs-31-python-and-short-reads.ipynb
 
 
ngs-41-velvet-genome-assembly.ipynb
ngs-41-velvet-genome-assembly.ipynb
 
 
ngs-42-oases-mRNAseq-assembly.ipynb
ngs-42-oases-mRNAseq-assembly.ipynb
 
 
ngs-43-trinity-mRNAseq-assembly.ipynb
ngs-43-trinity-mRNAseq-assembly.ipynb
 
 
ngs-44-kmer-distributions.ipynb
ngs-44-kmer-distributions.ipynb
 
 
ngs-51-gimme-tools.ipynb
ngs-51-gimme-tools.ipynb
 
 
ngs-5x-digital-normalization.ipynb
ngs-5x-digital-normalization.ipynb
 
 
ngs-5x-kmer-abundance-distributions-2013.ipynb
ngs-5x-kmer-abundance-distributions-2013.ipynb
 
 
ngs-61-intro-to-dicts.ipynb
ngs-61-intro-to-dicts.ipynb
 
 
ngs-62-screed-database-as-dict.ipynb
ngs-62-screed-database-as-dict.ipynb
 
 
ngs-70-hmp-diginorm.ipynb
ngs-70-hmp-diginorm.ipynb
 
 
ngs-71-hmp-partition.ipynb
ngs-71-hmp-partition.ipynb
 
 
reads.bed
reads.bed
 
 
run.sh
run.sh
 
 

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IPython notebooks for the MSU NGS summer course.

See:

http://bioinformatics.msu.edu/ngs-summer-course-2012

for more information.

C. Titus Brown, ctb@msu.edu

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