Issues

• Update toullig

  enhancement
  nf-core/seqinspector#295 · Filter by author chriswyatt1 opened on Oct 17, 2026

• Add bam as optional input

  enhancement
  nf-core/seqinspector#290 · Filter by author FernandoDuarteF opened on Oct 15, 2026 · 1.2.0
  

• Support ONT run folders in RUNDIRPARSER (MinKNOW report_*.json)

  enhancement
  nf-core/seqinspector#289 · Filter by author chriswyatt1 opened on Oct 15, 2026
  

• Re-work the tools bundles to make them more targeted

  enhancement
  Task

  nf-core/seqinspector#288 · Filter by author FranBonath opened on Oct 15, 2026 · 1.2.0
  

• Enable Element Bases2Fastq runfolder input to MultiQC

  enhancement
  nf-core/seqinspector#284 · Filter by author pontushojer opened on Sep 14, 2026 · 1.2.0

• Add per cycle base distribution on lane level

  enhancement
  nf-core/seqinspector#283 · Filter by author FranBonath opened on Sep 9, 2026 · 1.2.0
  

• Current mega tests run default tools in the pipeline on Sequera platform

  enhancement
  nf-core/seqinspector#277 · Filter by author agrima2010 opened on Aug 19, 2026 · 1.2.0
  

• Add Librarian for predicting Illumina library-type from base content.

  enhancement
  nf-core/seqinspector#274 · Filter by author pontushojer opened on Aug 18, 2026 · 1.2.0

• ToulligQC missing from tools table

  documentation
  Task

  nf-core/seqinspector#273 · Filter by author FranBonath opened on Aug 18, 2026 · 1.2.0
  

• Should there be a pattern matching for --tools for riker?

  nf-core/seqinspector#257 · Filter by author maxulysse opened on Jul 14, 2026 · 1.2.0

• Enable unaligned BAM (uBAM) input

  enhancement
  nf-core/seqinspector#248 · Filter by author pontushojer opened on Jul 7, 2026 · 1.2.0
  3

• Prefix all warns/errors with seqinspector

  documentationenhancement
  nf-core/seqinspector#217 · Filter by author maxulysse opened on Mar 20, 2026 · 1.2.0

• add to metromap for v1.1.0 - please add all tools as comments that need to be added

  documentation
  nf-core/seqinspector#214 · Filter by author FranBonath opened on Mar 13, 2026 · 1.2.0
  2

• Rundir parser (and other rundir specific modules) can not handle multiple rundirs

  bug
  Bug

  nf-core/seqinspector#211 · Filter by author matrulda opened on Mar 12, 2026 · 1.2.0

• update docs for Multiqc output

  documentationenhancement
  nf-core/seqinspector#196 · Filter by author FranBonath opened on Mar 11, 2026 · 1.2.0

• Use MultiQC seqfu module instead of custom content to improve report

  enhancement
  nf-core/seqinspector#126 · Filter by author pontushojer opened on Sep 8, 2025 · 1.2.0
  4

• Choose sensible default values for resource requirements

  documentation
  Task

  nf-core/seqinspector#93 · Filter by author Aratz opened on Mar 24, 2025 · 1.2.0
  1

  

• Allow fastqscreen inputs to just be a fasta

  enhancement
  nf-core/seqinspector#76 · Filter by author edmundmiller opened on Feb 24, 2025 · 1.2.0
  1

  

• Add SeqWho as alignment-free FastQScreen alternative

  enhancement
  nf-core/seqinspector#62 · Filter by author MatthiasZepper opened on Oct 29, 2024 · 1.2.0
  1

• Upstream FastQ-screen changes to modules

  nf-core/seqinspector#54 · Filter by author edmundmiller opened on Oct 29, 2024 · Overview_issues
  

• add bbtools to seqinspector

  nf-core/seqinspector#42 · Filter by author FranBonath opened on Oct 28, 2024 · 1.2.0

• add BBMap to seqinspector

  nf-core/seqinspector#38 · Filter by author FranBonath opened on Oct 28, 2024 · 1.2.0
  1

• add seqqc to seqinspector

  nf-core/seqinspector#37 · Filter by author FranBonath opened on Oct 28, 2024 · Overview_issues

• MultiQC output

  documentationenhancement
  nf-core/seqinspector#36 · Filter by author FranBonath opened on Oct 25, 2024 · Overview_issues
  3

  

• New subworkflow and module to assess polyG error in NovaSeq X Plus data

  enhancement
  Enhancement

  nf-core/seqinspector#29 · Filter by author MatthiasZepper opened on Oct 21, 2024 · Overview_issues
  5