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Flatiron Institute

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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 741 399

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 449 109

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 355 90

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 261 151

  5. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 163 56

  6. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 160 96

Repositories

Showing 10 of 247 repositories
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl's past year of commit activity
    TypeScript 14 Apache-2.0 3 12 4 Updated Oct 21, 2026
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft's past year of commit activity
    C++ 449 109 41 (3 issues need help) 14 Updated Oct 21, 2026
  • poet Public

    Perfectly Over Engineered Templates

    flatironinstitute/poet's past year of commit activity
    C++ 7 MIT 0 0 0 Updated Oct 21, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos's past year of commit activity
    Python 145 MIT 27 121 (1 issue needs help) 9 Updated Oct 21, 2026
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE's past year of commit activity
    CSS 1 MIT 0 0 0 Updated Oct 20, 2026
  • CyclicCAE_public Public

    The public repository for the CyclicCAE conformational autoencoder. CyclicCAE encodes peptide macrocycle conformations in a low-dimensional latent space, useful for rapid sampling, structural refinement, or denoising.

    flatironinstitute/CyclicCAE_public's past year of commit activity
    Python 4 BSD-3-Clause 1 0 2 Updated Oct 19, 2026
  • nemos-documentation Public

    Host nemos docs build

    flatironinstitute/nemos-documentation's past year of commit activity
    0 MIT 0 0 0 Updated Oct 19, 2026
  • software-citation-station Public

    A website for making citing software used in your research quick and easy

    flatironinstitute/software-citation-station's past year of commit activity
    TeX 31 5 5 (1 issue needs help) 0 Updated Oct 16, 2026
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack's past year of commit activity
    Nix 54 MIT 6 1 4 Updated Oct 16, 2026
  • FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.

    flatironinstitute/FMM3D's past year of commit activity
    Fortran 163 56 20 1 Updated Oct 16, 2026
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