Address review: fix Cargo.lock jsonpath for release-please; refuse sh…

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tests_pytest on: push 8

Check deeptools/galaxy/Rust versions stay in sync

Check galaxy wrapper args against Python CLI

Test on Linux (py312)

Test on Linux (py313)

Test on Linux (py314)

Test on OSX (py312)

Test on OSX (py313)

Test on OSX (py314)

tests_rust on: push 1

run cargo test

tests_docs on: push 1

Build Sphinx documentation

build_wheels on: push 3

linux (ubuntu-22.04, x86_64)

linux (ubuntu-22.04, aarch64)

musllinux (ubuntu-22.04, x86_64)

musllinux (ubuntu-22.04, aarch64)

macos (macos-latest, x86_64)

macos (macos-latest, aarch64)

sdist

Release

tests_planemo on: push 18

Planemo test (alignmentSieve)

Planemo test (bamCompare)

Planemo test (bamCoverage)

Planemo test (bamPEFragmentSize)

Planemo test (bigwigCompare)

Planemo test (bigwigAverage)

Planemo test (computeMatrix)

Planemo test (computeMatrixOperations)

Planemo test (estimateReadFiltering)

Planemo test (multiBamSummary)

Planemo test (multiBigwigSummary)

Planemo test (plotCorrelation)

Planemo test (plotCoverage)

Planemo test (plotEnrichment)

Planemo test (plotFingerprint)

Planemo test (plotHeatmap)

Planemo test (plotPCA)

Planemo test (plotProfiler)

tests_ruff on: push 1

Lint with ruff

build_wheels on: pull_request 3