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The deeptools sample data file no longer available in galaxy website #962
Description
If you would like to try out the protocols with sample data, go to deepTools Galaxy –> “Shared Data” –> “Data Libraries” –> “deepTools Test Files”. Simply select BED/BAM/bigWig files and click, “to History”. You can also download the test data sets to your computer by clicking “Download” at the top.
I follow the guide to try to download the Test files, however the data are no longer available. Could you please re-upload those files. Thanks.
Activity
dpryan79 commentedon Jun 24, 2020
Thanks for the reminder. The galaxy deepTools instance no longer exists. I'll talk to the EU Galaxy team about making test data available there.
dpryan79 commentedon Jun 24, 2020
@bgruening Is there a good way to make test data available to all users on the EU Galaxy instance?
bgruening commentedon Jun 24, 2020
Sure. Via a data library. https://usegalaxy.eu/library/list
bgruening commentedon Jun 24, 2020
Any special structure needed?
dpryan79 commentedon Jun 24, 2020
@bgruening I'll have to get back to you on the structure. If I still have VPN access I can look at what we used to have. Can regular users create globally visible data libraries? I'm not used to be a non-admin on Galaxy instances :P
bgruening commentedon Jun 24, 2020
No, they can't, but I can set one up for you or populate them.
Alternatively, you can add a similar file to GTN.yml to https://github.com/usegalaxy-eu/shared-data ... then those file get uploaded automatically.
WardDeb commentedon Sep 26, 2026
I've put a link to the benchmark/example zenodo data we used to set up 4.0.0 instead (#1482)