This repository was archived by the owner on Nov 1, 2026. It is now read-only.

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This repository was archived by the owner on Nov 1, 2026. It is now read-only.

Issues

Get Sequences by Id raises RecursionError when a download takes longer than about 10 seconds
bosborne/BioPythonUtils#18 · opened on Nov 1, 2026
Get Sequences by Id returns the records in completion order, not the order of the ids
bosborne/BioPythonUtils#17 · opened on Nov 1, 2026
README says default entrez_retmax is 20, settings file ships 1000; Search logs the wrong record count
bosborne/BioPythonUtils#16 · opened on Nov 1, 2026
Translate rejects IUPAC ambiguity codes such as N
bosborne/BioPythonUtils#15 · opened on Nov 1, 2026
Get Sequences by Taxon ignores entrez_retmax
bosborne/BioPythonUtils#14 · opened on Nov 1, 2026
UnboundLocalError after an error dialog in Search, Taxon and Translate (FASTA)
bosborne/BioPythonUtils#13 · opened on Nov 1, 2026
Get Sequences by Id: an unknown id pastes NCBI's error text as if it were a record
bosborne/BioPythonUtils#12 · opened on Nov 1, 2026
Bundled Biopython code: SyntaxWarning on Python 3.8+ and one module that cannot be compiled
bosborne/BioPythonUtils#11 · opened on Nov 1, 2026
Key binding for Get Sequences by Taxon uses a command that does not exist
bosborne/BioPythonUtils#9 · opened on Nov 1, 2026
Error dialogs contain a long run of spaces in the middle of the message
bosborne/BioPythonUtils#8 · opened on Nov 1, 2026
Translate: RNA input passes validation, then fails with UnboundLocalError
bosborne/BioPythonUtils#7 · opened on Nov 1, 2026
Select Remote BLAST database raises KeyError: None until an application was chosen
bosborne/BioPythonUtils#6 · opened on Nov 1, 2026
Remote BLAST blocks the whole editor while waiting for NCBI
bosborne/BioPythonUtils#5 · opened on Nov 1, 2026
Commands that write results to a new tab leave the tab empty (edit token of another view)
bosborne/BioPythonUtils#4 · opened on Nov 1, 2026