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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 34 9

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 144 repositories
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 0 0 Updated Oct 23, 2026
  • gpsadb Public
    YuLab-SMU/gpsadb's past year of commit activity
    R 0 0 0 0 Updated Oct 23, 2026
  • aisdk.mcp Public

    Model Context Protocol (MCP) Client and Server for 'aisdk'

    YuLab-SMU/aisdk.mcp's past year of commit activity
    R 0 0 0 0 Updated Oct 23, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 23, 2026
  • ggcircos Public
    YuLab-SMU/ggcircos's past year of commit activity
    R 3 GPL-3.0 1 1 0 Updated Oct 22, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    TypeScript 34 AGPL-3.0 9 15 2 Updated Oct 22, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    TypeScript 0 AGPL-3.0 0 0 0 Updated Oct 22, 2026
  • ssMOOD Public

    ssMOOD: Major Depression Omics Online Database integrating human & mouse single-cell and spatial transcriptomics data, featuring interactive analysis powered by Vue and Element Plus.

    YuLab-SMU/ssMOOD's past year of commit activity
    Vue 4 AGPL-3.0 3 0 0 Updated Oct 22, 2026
  • ggmsa Public

    🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

    YuLab-SMU/ggmsa's past year of commit activity
    R 220 29 45 0 Updated Oct 21, 2026
  • excercise Public
    YuLab-SMU/excercise's past year of commit activity
    HTML 0 1 0 0 Updated Oct 21, 2026