Issues

• model fitting result incorrect?

  YosefLab/ImpulseDE2#44 · Filter by author danatlin opened on Jun 5, 2025

• How could I print the specific gene?

  YosefLab/ImpulseDE2#43 · Filter by author Niohuruzh opened on Nov 20, 2024

• ImpulseDE2 troubleshooting

  YosefLab/ImpulseDE2#42 · Filter by author av894 opened on May 2, 2024

• Packages removed with Bioconductor 3.16 release

  YosefLab/ImpulseDE2#40 · Filter by author YU-LIN96 opened on Mar 24, 2023
  1

• Question about removing continuous confounders

  YosefLab/ImpulseDE2#39 · Filter by author lovebaboon1989 opened on Mar 21, 2023

• Questions about how to identify the expression pattern into Up/Down category

  YosefLab/ImpulseDE2#37 · Filter by author lovebaboon1989 opened on Jan 30, 2023

• Using ImpulseDE2 to analyze DNA methylation data

  YosefLab/ImpulseDE2#36 · Filter by author lovebaboon1989 opened on Dec 18, 2022
  2

• More than 2 conditions in dfAnnotation to compare

  YosefLab/ImpulseDE2#32 · Filter by author lovebaboon1989 opened on Jul 6, 2022
  2

• installation problem in R4.1.1

  YosefLab/ImpulseDE2#30 · Filter by author wangpenhok opened on Oct 28, 2021
  6

• Error fitting Impulse model

  YosefLab/ImpulseDE2#29 · Filter by author mallorymaynes opened on Oct 19, 2021
  4

• Normalization/Log2 transformation requirements

  YosefLab/ImpulseDE2#28 · Filter by author mallorymaynes opened on Oct 5, 2021
  4

• Comparison of model parameters without time

  YosefLab/ImpulseDE2#27 · Filter by author Balays opened on Jul 23, 2021

• Random effect/paired samples?

  YosefLab/ImpulseDE2#26 · Filter by author mayanbriller opened on Jul 18, 2021
  1

• Fit lines do not follow the sample points in plotGenes

  YosefLab/ImpulseDE2#25 · Filter by author dosshra opened on Jul 9, 2021
  1

• No points in plotGenes

  YosefLab/ImpulseDE2#24 · Filter by author dosshra opened on Jul 9, 2021
  4

• "plotGenes" plots fits but not data in "case" mode

  YosefLab/ImpulseDE2#23 · Filter by author mchimenti opened on Feb 5, 2021
  1

• Bioconductor deprecation warning!

  YosefLab/ImpulseDE2#22 · Filter by author janstrauss1 opened on Dec 22, 2020
  1

• plotHeatmap Rownames

  YosefLab/ImpulseDE2#21 · Filter by author AQPH222 opened on Jul 7, 2020
  6

• How to obtain and supply dispersion estimates for multiple batch effects

  YosefLab/ImpulseDE2#20 · Filter by author rjoyce-projects opened on Jun 29, 2020

• How do you annotate the heatmap ?

  YosefLab/ImpulseDE2#17 · Filter by author Fu-Luo opened on May 26, 2020

• Case-control heatmaps

  YosefLab/ImpulseDE2#16 · Filter by author mikefors08 opened on May 13, 2020
  1

• RNA-seq data without replicate

  YosefLab/ImpulseDE2#15 · Filter by author nachoryu opened on Apr 24, 2020
  5

• computeModelFits error : invalid argument to unary operator

  YosefLab/ImpulseDE2#14 · Filter by author gomeznick86 opened on Feb 19, 2020
  4

• rownames in dfAnnotation

  YosefLab/ImpulseDE2#13 · Filter by author Janderscan opened on Feb 18, 2020
  5

• Results table: although significant both is.Transient and is.Monotonous = FALSE

  YosefLab/ImpulseDE2#5 · Filter by author PsoAE opened on Jan 28, 2019
  1