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Prepare 0.105.1 - #4844

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alejoe91 merged 38 commits into
SpikeInterface:0.105-bug-fixesfrom
alejoe91:prepare-0.105.1
Oct 9, 2026
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Prepare 0.105.1#4844
alejoe91 merged 38 commits into
SpikeInterface:0.105-bug-fixesfrom
alejoe91:prepare-0.105.1

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@alejoe91 alejoe91 commented Oct 8, 2026 •
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alejoe91 and others added 30 commits September 21, 2026 17:48
@alejoe91
After release (SpikeInterface#4800)
626f70a
@JESUSROYETH @yger
Speed up Wobble peak search with a linear maximum filter (SpikeInterf…
b17c60f 
…ace#4782)

Co-authored-by: Jesús Royeth <JESUSROYETH@users.noreply.github.com>
Co-authored-by: Pierre Yger <pierre.yger@gmail.com>
@alejoe91
Fix: zarr pickling in SortingAnalyzer with try/except (SpikeInt…
80aa643 
…erface#4801)
@alejoe91
Fix: artifact detection crossing chunks (SpikeInterface#4803)
959e124
@JESUSROYETH
Speed up template similarity with pair-level parallelism (SpikeInterf…
e094b5e 
…ace#4785)

Co-authored-by: Jesús Royeth <JESUSROYETH@users.noreply.github.com>
@AtomicGlance @alejoe91
Clarify PSD threshold units and recording scaling (SpikeInterface#4808)
d7cdc97 
Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@AtomicGlance
Test empty postprocessing and metric extension outputs (SpikeInterfac…
ed12c03 
…e#4807)
@alejoe91
Fix: speed up loading (and compute sparse PCA projections) in lazy mo…
398222d 
…de (SpikeInterface#4806)
@alejoe91
Fix: drop new_unit_ids of non-mergeable units (SpikeInterface#4804)
4e0397b
@JESUSROYETH
Precompute unit-pair spatial overlap once in find_collisions (SpikeIn…
93c612f 
…terface#4797)

Co-authored-by: Jesús Royeth <JESUSROYETH@users.noreply.github.com>
@h-mayorquin
Don't follow symlinks when storing extractor paths (SpikeInterface#4812)
1666a0e
@h-mayorquin
Enable case omission on get_unit_spike_train_in_seconds (SpikeInter…
7d7bd21 
…face#4811)
@alejoe91
Fix: provenance handling in SortingAnalyzer (SpikeInterface#4805)
0c9b6b9
@h-mayorquin
Drop the separate core test workflow (SpikeInterface#4822)
3d3ee44
@h-mayorquin
Run the tests with forkserver on Linux (SpikeInterface#4818)
b0aba19
@h-mayorquin
Add a dev dependency group so uv installs pre-commit by default (Sp…
6bec8d9 
…ikeInterface#4815)
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (SpikeInterface#4828)
d0c9339 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@h-mayorquin
Don't mount remote paths when running a sorter in a container (SpikeI…
6fd8630 
…nterface#4821)
@h-mayorquin
Read the last spike from the unit end offsets in NwbSortingExtractor (
04cae98 
SpikeInterface#4819)
@alejoe91
fix: cast infinites to NaN is overflow error (SpikeInterface#4830)
2750986
@JESUSROYETH
Speed up FFT phase shifts for Neuropixels recordings (SpikeInterface#…
11e5ca4 
…4802)

Co-authored-by: Jesús Royeth <JESUSROYETH@users.noreply.github.com>
@JoeZiminski @alejoe91
Fix sorting times segment propagation (SpikeInterface#4796)
d89765e 
Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@JESUSROYETH @alejoe91
Avoid dense waveform allocation when exporting PC features (SpikeInte…
10ffd52 
…rface#4789)

Co-authored-by: Jesús Royeth <JESUSROYETH@users.noreply.github.com>
Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@alejoe91
fix: remove set_times warning (SpikeInterface#4834)
6ef7195
@h-mayorquin
Add NeuroExplorerSortingExtractor (SpikeInterface#4825)
0421d0b
@alejoe91 @chrishalcrow
Extract waveforms to zarr dataset (SpikeInterface#4708)
6708311 
Co-authored-by: Chris Halcrow <57948917+chrishalcrow@users.noreply.github.com>
@h-mayorquin
Build one probe per electrode group in NwbRecordingExtractor (SpikeIn…
5cacee5 
…terface#4820)
@alejoe91
Fix group (and other property) propagation in channel slice (SpikeInt…
a633c22 
…erface#4838)
@h-mayorquin @chrishalcrow @alejoe91
Support python 3.14 (SpikeInterface#4173)
6ab884d 
Co-authored-by: Chris Halcrow <57948917+chrishalcrow@users.noreply.github.com>
Co-authored-by: chrishalcrow <chrishalcrow@gmail.com>
Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@grahamfindlay @alejoe91
UnitSelectionSorting improvements: remove lexsort, fix bug, save memo…
2182c28 
…ry by sharing parent cache when possible (SpikeInterface#4783)

Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@alejoe91 alejoe91 added this to the 0.105.1 milestone Oct 8, 2026
@alejoe91
alejoe91 marked this pull request as ready for review October 8, 2026 14:52
grahamfindlay and others added 4 commits October 9, 2026 10:20
@grahamfindlay @alejoe91
Override search_cached_spikes_sorted for identity selections (SpikeIn…
58ebbaf 
…terface#4845)

Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@alejoe91
doc: update PR list
1d0dd8b
@guptaishaan @alejoe91
Fix manual split example in process_by_channel_group docs (SpikeInter…
64b126b 
…face#4846)

Co-authored-by: guptaishaan <guptaishaan@users.noreply.github.com>
Co-authored-by: Alessio Buccino <alejoe9187@gmail.com>
@alejoe91
doc: add last PR
8e8b548
@alejoe91
alejoe91 merged commit ed6decc into SpikeInterface:0.105-bug-fixes Oct 9, 2026
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@alejoe91 @samuelgarcia @JESUSROYETH @AtomicGlance @h-mayorquin @JoeZiminski @grahamfindlay @guptaishaan