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MetExplore

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  1. miom miom Public

    Constraint-based modeling of metabolism using Mixed Integer Optimization

    Python 12 2

  2. dexom dexom Public

    Diversity-based enumeration of optimal context-specific metabolic networks

    MATLAB 7 1

  3. met4j met4j Public

    Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.

    Java 2

  4. phnmnl-FingerprintClustering phnmnl-FingerprintClustering Public

    Performs unsupervised clustering among a metabolic network from a fingerprint

    R 1

  5. MetExploreViz MetExploreViz Public

    JavaScript 1

  6. dexom-python dexom-python Public

    diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

    Python 1

Repositories

Showing 10 of 18 repositories
  • met4j Public

    Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks. It also came with a toolbox gathering CLI for several analyses relevant to metabolism-related research.

    MetExplore/met4j's past year of commit activity
    Java 2 0 1 0 Updated Oct 2, 2026
  • dexom-python Public

    diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

    MetExplore/dexom-python's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 28, 2026
  • metexplore3api_client_r Public
    MetExplore/metexplore3api_client_r's past year of commit activity
    R 1 0 0 0 Updated Sep 2, 2025
  • insilico_metabolic_analyses_tutorials_and_courses Public

    In this repo are listed all the public resources to learn in silico metabolic analyses

    MetExplore/insilico_metabolic_analyses_tutorials_and_courses's past year of commit activity
    1 1 0 1 Updated Sep 1, 2025
  • miom Public

    Constraint-based modeling of metabolism using Mixed Integer Optimization

    MetExplore/miom's past year of commit activity
    Python 12 GPL-3.0 2 8 0 Updated Sep 24, 2024
  • MetExploreViz Public
    MetExplore/MetExploreViz's past year of commit activity
    JavaScript 1 GPL-3.0 0 0 0 Updated Oct 13, 2022
  • metexplore2_maintenance Public
    MetExplore/metexplore2_maintenance's past year of commit activity
    HTML 0 0 2 0 Updated Jun 23, 2022
  • dexom Public

    Diversity-based enumeration of optimal context-specific metabolic networks

    MetExplore/dexom's past year of commit activity
    MATLAB 7 GPL-3.0 1 2 0 Updated Jul 2, 2021
  • dexom-evaluation Public

    DEXOM submodule with data for evaluation

    MetExplore/dexom-evaluation's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 18, 2020
  • cobratoolbox-lib Public

    COBRA Toolbox without submodules and minor modifications to improve reproducibility

    MetExplore/cobratoolbox-lib's past year of commit activity
    MATLAB 0 0 0 0 Updated Jul 21, 2020
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