{2025.06} rebuild Julia v`1.12.2` (remove untrusted certs + pickup new hook) by Crivella · Pull Request #1847 · EESSI/software-layer

Crivella · 2026-10-22T12:40:30Z

~~Considering Julia also includes the emSign certs we might want to wait for this to see if we can fix it in EB, but i would use this PR to test the hooks from~~

Includes patches from

add patch for Julia multiarch to remove emSign root CA certificate + add Julia 1.13.2 easybuilders/easybuild-easyconfigs#27230

to remove emSign untrusted certs

Includes hooks from

Add hook to include --cpu-target for julia wrappers software-layer-scripts#327

in order to manually fix the --cpu-target used by Julia instead of relying on automatic detection. Should fix

{2025.06}[system/system] Add AITW-Clearwood_stiffness_model v0.1.0 #1828 (comment)

boegel · 2026-10-27T11:33:11Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-aws-eu-south for:arch=x86_64/amd/zen5

eessi-bot-aws · 2026-10-27T11:33:21Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217163

date	job status	comment
Oct 27 11:33:19 UTC 2026	submitted	job id `217163` awaits release by job manager
Oct 27 11:34:05 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 11:41:40 UTC 2026	running	job `217163` is running
Oct 27 11:43:49 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217163.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-generic-17931013490.tar.zst` size: 241 MiB (252925567 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/generic/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/generic/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/generic/reprod `Julia/1.12.2/20260420_115317UTC` `Julia/1.12.2/20261027_114217UTC` other under 2025.06/software/linux/x86_64/generic no other files in tarball
Oct 27 11:43:49 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217163.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:44:57 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-generic-17931013490.tar.zst` to S3 bucket succeeded

eessi-bot-jsc · 2026-10-27T11:33:23Z

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2026.10/pr_1847/15747952

date	job status	comment
Oct 27 11:33:21 UTC 2026	submitted	job id `15747952` awaits release by job manager
Oct 27 11:34:26 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 11:35:30 UTC 2026	running	job `15747952` is running
Oct 27 12:03:13 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-15747952.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-nvidia-grace-17931023250.tar.gz` size: 290 MiB (305097400 bytes) entries: 6151 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/aarch64/nvidia/grace/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod `Julia/1.12.2/20260420_120145UTC` `Julia/1.12.2/20261027_115711UTC` other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Oct 27 12:03:13 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-15747952.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:44:58 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-nvidia-grace-17931023250.tar.gz` to S3 bucket succeeded

eessi-bot-deucalion · 2026-10-27T11:33:24Z

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2026.10/pr_1847/2150841

date	job status	comment
Oct 27 11:33:23 UTC 2026	submitted	job id `2150841` awaits release by job manager
Oct 27 11:34:27 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 11:35:33 UTC 2026	running	job `2150841` is running
Oct 27 11:53:51 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2150841.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-a64fx-17931018880.tar.zst` size: 268 MiB (281216960 bytes) entries: 6151 modules under 2025.06/software/linux/aarch64/a64fx/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/aarch64/a64fx/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod `Julia/1.12.2/20260420_120503UTC` `Julia/1.12.2/20261027_115035UTC` other under 2025.06/software/linux/aarch64/a64fx no other files in tarball
Oct 27 11:53:51 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-2150841.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:01 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-a64fx-17931018880.tar.zst` to S3 bucket succeeded

eessi-bot-aws-eu-south · 2026-10-27T11:33:27Z

New job on instance eessi-bot-aws-eu-south for repository eessi.io-2025.06-software
Building on: amd-zen5
Building for: x86_64/amd/zen5
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/620

date	job status	comment
Oct 27 11:33:25 UTC 2026	submitted	job id `620` awaits release by job manager
Oct 27 11:33:41 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 11:40:46 UTC 2026	running	job `620` is running
Oct 27 11:52:15 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-620.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen5-17931018920.tar.zst` size: 241 MiB (252876922 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/amd/zen5/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/amd/zen5/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/amd/zen5/reprod `Julia/1.12.2/20260420_115316UTC` `Julia/1.12.2/20261027_115124UTC` other under 2025.06/software/linux/x86_64/amd/zen5 no other files in tarball
Oct 27 11:52:15 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-620.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:00 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen5-17931018920.tar.zst` to S3 bucket succeeded

boegel · 2026-10-27T12:03:00Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen3
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen4
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/haswell
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/icelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/cascadelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/sapphirerapids
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_n1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_v1

eessi-bot-aws · 2026-10-27T12:03:09Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217192

date	job status	comment
Oct 27 12:03:07 UTC 2026	submitted	job id `217192` awaits release by job manager
Oct 27 12:04:38 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:17:32 UTC 2026	running	job `217192` is running
Oct 27 12:31:25 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217192.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen2-17931041120.tar.zst` size: 241 MiB (252926732 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/amd/zen2/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod `Julia/1.12.2/20260420_113737UTC` `Julia/1.12.2/20261027_122815UTC` other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Oct 27 12:31:25 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217192.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:10 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen2-17931041120.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:16Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen3
Building for: x86_64/amd/zen3
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217193

date	job status	comment
Oct 27 12:03:14 UTC 2026	submitted	job id `217193` awaits release by job manager
Oct 27 12:04:41 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:24:20 UTC 2026	running	job `217193` is running
Oct 27 12:36:24 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217193.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen3-17931045150.tar.zst` size: 241 MiB (252917858 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/amd/zen3/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/amd/zen3/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/amd/zen3/reprod `Julia/1.12.2/20260420_115151UTC` `Julia/1.12.2/20261027_123501UTC` other under 2025.06/software/linux/x86_64/amd/zen3 no other files in tarball
Oct 27 12:36:24 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217193.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:22 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen3-17931045150.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:21Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen4
Building for: x86_64/amd/zen4
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217194

date	job status	comment
Oct 27 12:03:20 UTC 2026	submitted	job id `217194` awaits release by job manager
Oct 27 12:04:44 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:26:04 UTC 2026	running	job `217194` is running
Oct 27 12:37:56 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217194.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen4-17931045650.tar.zst` size: 241 MiB (252899694 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/amd/zen4/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/amd/zen4/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/amd/zen4/reprod `Julia/1.12.2/20260420_115142UTC` `Julia/1.12.2/20261027_123553UTC` other under 2025.06/software/linux/x86_64/amd/zen4 no other files in tarball
Oct 27 12:37:56 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217194.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:35 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-amd-zen4-17931045650.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:27Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-haswell
Building for: x86_64/intel/haswell
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217195

date	job status	comment
Oct 27 12:03:26 UTC 2026	submitted	job id `217195` awaits release by job manager
Oct 27 12:04:50 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:27:53 UTC 2026	running	job `217195` is running
Oct 27 12:40:57 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217195.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-haswell-17931047230.tar.zst` size: 241 MiB (252918921 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/intel/haswell/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/intel/haswell/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/intel/haswell/reprod `Julia/1.12.2/20260420_115201UTC` `Julia/1.12.2/20261027_123827UTC` other under 2025.06/software/linux/x86_64/intel/haswell no other files in tarball
Oct 27 12:40:57 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217195.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:45:47 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-haswell-17931047230.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:33Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-skylake_avx512
Building for: x86_64/intel/skylake_avx512
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217196

date	job status	comment
Oct 27 12:03:31 UTC 2026	submitted	job id `217196` awaits release by job manager
Oct 27 12:04:55 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:29:39 UTC 2026	running	job `217196` is running
Oct 27 12:31:28 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217196.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17931041620.tar.zst` size: 241 MiB (253187616 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/intel/skylake_avx512/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/intel/skylake_avx512/reprod `Julia/1.12.2/20260420_115202UTC` `Julia/1.12.2/20261027_122911UTC` other under 2025.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Oct 27 12:31:28 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217196.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:46:00 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17931041620.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:39Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-icelake
Building for: x86_64/intel/icelake
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217197

date	job status	comment
Oct 27 12:03:37 UTC 2026	submitted	job id `217197` awaits release by job manager
Oct 27 12:04:53 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 13:06:17 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job217197.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Oct 27 13:06:17 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job217197.test` does not exist in job directory or reading it failed.

eessi-bot-aws · 2026-10-27T12:03:45Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-cascadelake
Building for: x86_64/intel/cascadelake
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217198

date	job status	comment
Oct 27 12:03:43 UTC 2026	submitted	job id `217198` awaits release by job manager
Oct 27 12:04:47 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:27:50 UTC 2026	running	job `217198` is running
Oct 27 12:39:30 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217198.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-cascadelake-17931046590.tar.zst` size: 241 MiB (252933646 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/intel/cascadelake/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/intel/cascadelake/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/intel/cascadelake/reprod `Julia/1.12.2/20260420_115200UTC` `Julia/1.12.2/20261027_123726UTC` other under 2025.06/software/linux/x86_64/intel/cascadelake no other files in tarball
Oct 27 12:39:30 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217198.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:46:13 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-cascadelake-17931046590.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:50Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-sapphirerapids
Building for: x86_64/intel/sapphirerapids
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217199

date	job status	comment
Oct 27 12:03:49 UTC 2026	submitted	job id `217199` awaits release by job manager
Oct 27 12:04:58 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:29:46 UTC 2026	running	job `217199` is running
Oct 27 12:31:33 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217199.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17931041850.tar.zst` size: 241 MiB (253202300 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/intel/sapphirerapids/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/intel/sapphirerapids/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/intel/sapphirerapids/reprod `Julia/1.12.2/20260420_115307UTC` `Julia/1.12.2/20261027_122928UTC` other under 2025.06/software/linux/x86_64/intel/sapphirerapids no other files in tarball
Oct 27 12:31:33 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217199.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:46:25 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17931041850.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:03:56Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: aarch64/generic
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217200

date	job status	comment
Oct 27 12:03:54 UTC 2026	submitted	job id `217200` awaits release by job manager
Oct 27 12:04:29 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:20:44 UTC 2026	running	job `217200` is running
Oct 27 12:22:58 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217200.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-generic-17931037150.tar.zst` size: 267 MiB (280615501 bytes) entries: 6151 modules under 2025.06/software/linux/aarch64/generic/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/aarch64/generic/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/aarch64/generic/reprod `Julia/1.12.2/20260420_115313UTC` `Julia/1.12.2/20261027_122144UTC` other under 2025.06/software/linux/aarch64/generic no other files in tarball
Oct 27 12:22:58 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217200.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:46:38 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-generic-17931037150.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:04:02Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_n1
Building for: aarch64/neoverse_n1
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217201

date	job status	comment
Oct 27 12:04:00 UTC 2026	submitted	job id `217201` awaits release by job manager
Oct 27 12:04:32 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:20:50 UTC 2026	running	job `217201` is running
Oct 27 12:34:46 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217201.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_n1-17931043380.tar.zst` size: 267 MiB (280611046 bytes) entries: 6151 modules under 2025.06/software/linux/aarch64/neoverse_n1/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/aarch64/neoverse_n1/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/aarch64/neoverse_n1/reprod `Julia/1.12.2/20260420_113854UTC` `Julia/1.12.2/20261027_123202UTC` other under 2025.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Oct 27 12:34:46 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217201.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:46:52 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-neoverse_n1-17931043380.tar.zst` to S3 bucket succeeded

eessi-bot-aws · 2026-10-27T12:04:07Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_v1
Building for: aarch64/neoverse_v1
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217202

date	job status	comment
Oct 27 12:04:06 UTC 2026	submitted	job id `217202` awaits release by job manager
Oct 27 12:04:35 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:22:31 UTC 2026	running	job `217202` is running
Oct 27 12:34:48 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217202.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_v1-17931043960.tar.zst` size: 267 MiB (280592843 bytes) entries: 6151 modules under 2025.06/software/linux/aarch64/neoverse_v1/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/aarch64/neoverse_v1/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/aarch64/neoverse_v1/reprod `Julia/1.12.2/20260420_115304UTC` `Julia/1.12.2/20261027_123303UTC` other under 2025.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Oct 27 12:34:48 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217202.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:47:05 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-aarch64-neoverse_v1-17931043960.tar.zst` to S3 bucket succeeded

boegel · 2026-10-27T12:56:08Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/icelake

eessi-bot-aws · 2026-10-27T12:56:16Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-icelake
Building for: x86_64/intel/icelake
Job dir: /project/def-users/SHARED/jobs/2026.10/pr_1847/217209

date	job status	comment
Oct 27 12:56:14 UTC 2026	submitted	job id `217209` awaits release by job manager
Oct 27 12:57:17 UTC 2026	released	job awaits launch by Slurm scheduler
Oct 27 12:59:00 UTC 2026	running	job `217209` is running
Oct 27 13:10:31 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-217209.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-intel-icelake-17931065380.tar.zst` size: 241 MiB (252904526 bytes) entries: 6154 modules under 2025.06/software/linux/x86_64/intel/icelake/modules/all `Julia/1.12.2.lua` software under 2025.06/software/linux/x86_64/intel/icelake/software `Julia/1.12.2` reprod directories under 2025.06/software/linux/x86_64/intel/icelake/reprod `Julia/1.12.2/20260420_115149UTC` `Julia/1.12.2/20261027_130845UTC` other under 2025.06/software/linux/x86_64/intel/icelake no other files in tarball
Oct 27 13:10:31 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-217209.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 27 20:47:18 UTC 2026	uploaded	transfer of `eessi-2025.06-software-linux-x86_64-intel-icelake-17931065380.tar.zst` to S3 bucket succeeded

bedroge · 2026-10-28T07:46:52Z

Ingested using:

#!/bin/bash
cvmfs_server transaction software.eessi.io

tarballs=(
eessi-2025.06-software-linux-aarch64-a64fx-17931018880.tar.zst
eessi-2025.06-software-linux-aarch64-generic-17931037150.tar.zst
eessi-2025.06-software-linux-aarch64-neoverse_n1-17931043380.tar.zst
eessi-2025.06-software-linux-aarch64-neoverse_v1-17931043960.tar.zst
eessi-2025.06-software-linux-aarch64-nvidia-grace-17931023250.tar.gz
eessi-2025.06-software-linux-x86_64-amd-zen2-17931041120.tar.zst
eessi-2025.06-software-linux-x86_64-amd-zen3-17931045150.tar.zst
eessi-2025.06-software-linux-x86_64-amd-zen4-17931045650.tar.zst
eessi-2025.06-software-linux-x86_64-amd-zen5-17931018920.tar.zst
eessi-2025.06-software-linux-x86_64-generic-17931013490.tar.zst
eessi-2025.06-software-linux-x86_64-intel-cascadelake-17931046590.tar.zst
eessi-2025.06-software-linux-x86_64-intel-haswell-17931047230.tar.zst
eessi-2025.06-software-linux-x86_64-intel-icelake-17931065380.tar.zst
eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17931041850.tar.zst
eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17931041620.tar.zst
)

apps=(
Julia/1.12.2
)

# Remove already installed applications
for tarball in ${tarballs[*]}; do
  for app in ${apps[*]}; do
    IFS='-' read -r -a fields <<< "${tarball}"
    eessi_version="${fields[1]}"
    if [[ "${fields[-3]}" == *"64" ]]; then
      # short CPU path, e.g. x86_64/generic
      arch="${fields[-3]}/${fields[-2]}"
    else
      # longer path, e.g. x86_64/amd/zen2
      arch="${fields[-4]}/${fields[-3]}/${fields[-2]}"
    fi
    rm -rf "cvmfs/software.eessi.io/versions/${eessi_version}/software/linux/${arch}/software/${app}"
  done
done

cd /cvmfs/software.eessi.io/versions

for tarball in ${tarballs[*]}; do
  IFS='-' read -r -a fields <<< "${tarball}"
  timestamp="${fields[-1]}"
  eessi_version="${fields[1]}"
  if [[ "${fields[-3]}" == *"64" ]]; then
    arch="${fields[-3]}/${fields[-2]}"
  else
    arch="${fields[-4]}/${fields[-3]}/${fields[-2]}"
  fi
  if [[ $tarball == *".tar.gz" ]]; then
    tar_cmd="tar -xzf"
  else
    tar_cmd="tar -I zstd -xf"
  fi
  tar_file="/srv/tmp/tarballs-bundles/${eessi_version}/software/linux/${arch}/${timestamp%.tar.gz}/${tarball}"
  if [[ ! -f "$tar_file" ]]; then
    echo "ERROR: $tar_file does not exist!"
  fi
  $tar_cmd "$tar_file"
done

cd

script_file=$(basename "$0")
diff_file=${script_file%.*}.diff
cvmfs_server diff --worktree software.eessi.io >> ${diff_file}
num_tarballs=${#tarballs[*]}
num_apps=${#apps[*]}
num_apps_modified=$(grep -f <(printf 'software/%s$\n' "${apps[@]}") ${diff_file} | wc -l)
num_modules_added=$(grep "modules/all/.*\.lua" ${diff_file} | grep "\[add\]" | wc -l)
num_modules_removed=$(grep "modules/all/.*\.lua" ${diff_file} | grep "\[rem\]" | wc -l)
echo "$num_tarballs tarballs, $num_apps applications -> $(( ${num_tarballs} * ${num_apps} )) installations in total."
echo "$num_modules_removed modules removed, $num_modules_added modules (re)added"
echo "$num_apps_modified installation directories modified"
cvmfs_server publish -m "rebuilds for Julia 1.12.2 to solve eMudhra issue, 2025.06, PR 1847" software.eessi.io

Crivella changed the title ~~{2025.06} rebuild Julia v1.12.2~~ {2025.06} rebuild Julia v1.12.2 (remove untrusted certs + pickup new hook) Oct 23, 2026

ocaisa reviewed Oct 26, 2026

View reviewed changes

Comment thread bot/software_layer_scripts_commit

Crivella added 5 commits October 26, 2026 18:07

rebuild of Julia

b772727

Fix filename

7999637

Bump software layer script commit to include new hook

f655fc7

Also remove untrusted certs

e986be7

Use merge commit for the hook

848d5e7

Crivella force-pushed the rebuild-julia branch from 7baf48d to 848d5e7 Compare October 26, 2026 17:08

boegel added bot:deploy Ask bot to deploy missing software installations to EESSI 2025.06-software.eessi.io 2025.06 version of software.eessi.io labels Oct 27, 2026

boegel approved these changes Oct 28, 2026

View reviewed changes

boegel merged commit def061f into EESSI:main Oct 28, 2026
39 of 42 checks passed

Crivella deleted the rebuild-julia branch October 28, 2026 08:51

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