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Test suite ahead of the ete3 → ete4 migration - #112

Merged

alpae merged 13 commits into

devfrom

Nov 4, 2026

Merged

Test suite ahead of the ete3 → ete4 migration#112
alpae merged 13 commits into
devfrom
test/testsuite

Commits on Oct 20, 2026
Commits on Nov 4, 2026
- test: golden snapshots and no-dropped-protein checks on fungi-30 rootHOGs
  
  alpae
  and
  claude
  committed
  de46004
- test(nf-test): rebuild input archive without macOS AppleDouble files
  
  alpae
  and
  claude
  committed
  7abe2dc
- test: pin hidden files in input folders being taken as proteomes/hogmaps
  
  alpae
  and
  claude
  committed
  8c47c7e
- test: pin ImpliedLosses counting losses for complete HOGs
  
  alpae
  and
  claude
  committed
  bdb1b46
- test(fungi30): run regeneration as the caller and refuse mixed tool versions
  
  alpae
  and
  claude
  committed
  880c83d
- test(fungi30): quote the container command for paths with spaces
  
  alpae
  and
  claude
  committed
  768c468