[harryswift01]

Summary

This PR moves Python-Template onto the shared CCPBioSim workflows, Renovate presets and community files in CCPBioSim/.github, and aligns its layout with CodeEntropy so that new packages created from the template start with the same setup as the existing packages. Closes #79.

Changes

Shared CI workflows:

• Replace example_package_project-ci.yaml with pr.yaml, weekly-tests.yaml, coveralls-main.yaml and weekly-docs.yaml, calling the shared workflows pinned to release 0.13.0.
• Pull requests run unit tests on ubuntu-26.04, macos-26 and windows-2025-vs2026 across Python 3.12–3.14, with coverage and the lowest-dependencies check, plus docs, pre-commit and a conda build check.
• The weekly runs repeat the tests with the lowest-dependencies check and build the docs on all three operating systems.
• The license-year workflow calls the shared maintenance-license-year workflow.

Release pipeline:

• release.yaml uses the shared release-prepare, release-website, release-pypi and release-conda workflows, matching CodeEntropy.
• Fix the version file path, which pointed at src/example_package/__init__.py, a layout the template does not use.
• Add conda-recipe/meta.yaml, which reads requires-python and the runtime dependencies from pyproject.toml.
• Add .github/web-meta.yaml with placeholder metadata for the CCPBioSim website.

Docs and tests layout:

• Move the Sphinx sources from docs/source to docs, build into docs/_build, and remove make.bat, matching CodeEntropy.
• Align conf.py with CodeEntropy: repository root on sys.path, a rolling copyright year and Google-style docstrings.
• Add the missing _static and _templates directories, so the docs build passes with warnings as errors.
• Move the tests under tests/unit.

Project configuration:

• Use the CodeEntropy ruff rules (E, F, I, B, UP).
• Replace the --cov pytest options with -vv -ra, so the shared workflow controls where coverage is measured.
• Add rstcheck to the pre-commit extra, cap ruff below 1.0, and drop unused Sphinx extensions from the docs extra.

Shared Renovate and community files:

• .github/renovate.json extends the shared renovate/default and renovate/python presets.
• Remove the local issue templates, pull request template and contributing guidelines, so the organisation defaults apply.
• Update the README badges for the new workflows and add Citation and Anaconda rows.

Impact

• New packages created from the template get the same CI, release and Renovate setup as the existing CCPBioSim packages, and CI fixes made in CCPBioSim/.github reach them through Renovate pin updates.
• Pull requests now test on Linux, macOS and Windows, and the docs build fails on warnings, so some problems that previously passed will now be caught.
• Running pytest locally no longer reports coverage by default. Pass --cov example_package to see it.
• A real release of the template now publishes to the CCPBioSim website and Anaconda.org as well as PyPI, so test releases should use dry-run: true.
• The Citation badge uses a placeholder Zenodo ID until a package fills in its own.