github-actions.yml

name: build
on: [push, pull_request]

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
  contents: read
  pages: write
  id-token: write

jobs:
  test:
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    timeout-minutes: 45
    strategy:
      fail-fast: true
      matrix:
        include:
          - name: 'check'
            python: '3.11'
            toxpython: 'python3.11'
            tox_env: 'check'
            os: 'ubuntu-latest'
          - name: 'docs'
            python: '3.11'
            toxpython: 'python3.11'
            tox_env: 'docs'
            os: 'ubuntu-latest'
          - name: 'py38 (ubuntu)'
            python: '3.8'
            toxpython: 'python3.8'
            python_arch: 'x64'
            tox_env: 'py38'
            os: 'ubuntu-22.04'
          - name: 'py39 (ubuntu)'
            python: '3.9'
            toxpython: 'python3.9'
            python_arch: 'x64'
            tox_env: 'py39'
            os: 'ubuntu-22.04'
          - name: 'py310 (ubuntu)'
            python: '3.10'
            toxpython: 'python3.10'
            python_arch: 'x64'
            tox_env: 'py310'
            os: 'ubuntu-latest'
#          - name: 'py310 (windows)'
#            python: '3.10'
#            toxpython: 'python3.10'
#            python_arch: 'x64'
#            tox_env: 'py310'
#            os: 'windows-latest'
          - name: 'py311 (ubuntu)'
            python: '3.11'
            toxpython: 'python3.11'
            python_arch: 'x64'
            tox_env: 'py311'
            os: 'ubuntu-latest'
          - name: 'py311 (macos)'
            python: '3.11'
            toxpython: 'python3.11'
            python_arch: 'x64'
            tox_env: 'py311'
            os: 'macos-latest'
          - name: 'py311 (windows)'
            python: '3.11'
            toxpython: 'python3.11'
            python_arch: 'x64'
            tox_env: 'py311'
            os: 'windows-latest'
            mplbackend: 'Agg'
          - name: 'py312 (ubuntu)'
            python: '3.12'
            toxpython: 'python3.12'
            python_arch: 'x64'
            tox_env: 'py312'
            os: 'ubuntu-latest'
          - name: 'py313 (ubuntu)'
            python: '3.13'
            toxpython: 'python3.13'
            python_arch: 'x64'
            tox_env: 'py313'
            os: 'ubuntu-latest'
#          - name: 'py314 (ubuntu)'
#            python: '3.14'
#            toxpython: 'python3.14'
#            python_arch: 'x64'
#            tox_env: 'py314'
#            os: 'ubuntu-latest'
#          - name: 'pypy38 (ubuntu)'
#            python: 'pypy-3.8'
#            toxpython: 'pypy3.8'
#            python_arch: 'x64'
#            tox_env: 'pypy38'
#            os: 'ubuntu-latest'
#          - name: 'pypy38 (macos)'
#            python: 'pypy-3.8'
#            toxpython: 'pypy3.8'
#            python_arch: 'x64'
#            tox_env: 'pypy38'
#            os: 'macos-latest'
#          - name: 'pypy39 (ubuntu)'
#            python: 'pypy-3.9'
#            toxpython: 'pypy3.9'
#            python_arch: 'x64'
#            tox_env: 'pypy39'
#            os: 'ubuntu-latest'
#          - name: 'pypy39 (macos)'
#            python: 'pypy-3.9'
#            toxpython: 'pypy3.9'
#            python_arch: 'x64'
#            tox_env: 'pypy39'
#            os: 'macos-latest'

    steps:
    - uses: actions/checkout@v6
      with:
        fetch-depth: 0
    - uses: actions/setup-python@v6
      with:
        python-version: ${{ matrix.python }}
        architecture: ${{ matrix.python_arch }}
    - name: install dependencies
      run: |
        python -mpip install --upgrade pip
        python -mpip install --progress-bar=off -r ci/requirements.txt
        virtualenv --version
        pip --version
        tox --version
        pip list --format=freeze
    - name: test
      env:
        TOXPYTHON: '${{ matrix.toxpython }}'
        MPLBACKEND: '${{ matrix.mplbackend }}'
      run: >
        tox -e ${{ matrix.tox_env }} -v

  coverage:
    name: Upload coverage to Codecov

    # Run only in softwareengineerprogrammer fork and prevent from running on PRs, tags
    if: |
      github.ref == 'refs/heads/main' &&
      github.repository == 'softwareengineerprogrammer/GEOPHIRES'

    needs: test
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v6
        with:
          fetch-depth: 0
      - uses: actions/setup-python@v6
        with:
          python-version: '3.11'
          architecture: 'x64'
      - name: install dependencies
        run: |
          python -mpip install --upgrade pip
          python -mpip install --progress-bar=off -r ci/requirements.txt
          virtualenv --version
          pip --version
          tox --version
          pip list --format=freeze
      - name: generate coverage report
        env:
          TOXPYTHON: '3.11'
        run: |
          tox -e py311

      - name: Codecov GitHub Action
        uses: codecov/codecov-action@v6
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          # Token configuration: https://github.com/softwareengineerprogrammer/GEOPHIRES/settings/secrets/actions
          # See https://github.com/NatLabRockies/GEOPHIRES-X/pull/468 for further details


  deploy_docs:
    name: Deploy docs to GitHub Pages
    if: github.ref == 'refs/heads/main' # Prevent from running on PRs, tags
    environment:
      name: github-pages
      url: ${{ steps.deployment.outputs.page_url }}
    needs: test
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v6
      with:
        fetch-depth: 0
    - uses: actions/setup-python@v6
      with:
        python-version: '3.11'
        architecture: 'x64'
    - name: install dependencies
      run: |
        python -mpip install --upgrade pip
        python -mpip install --progress-bar=off -r ci/requirements.txt
        virtualenv --version
        pip --version
        tox --version
        pip list --format=freeze

    - name: generate docs
      env:
        TOXPYTHON: '3.11'
      run: |
        tox -e docs -v
        ls -l dist/docs
        cp -r dist/docs _site/

    - name: fix permissions # https://github.com/actions/upload-pages-artifact#file-permissions
      run: |
        chmod -c -R +rX "_site/" | while read line; do
          echo "::warning title=Invalid file permissions automatically fixed::$line"
        done

    - name: upload artifact
      uses: actions/upload-pages-artifact@v5

    - name: deploy to GitHub Pages
      id: deployment
      uses: actions/deploy-pages@v5