Issues

• Add genotype to phenopacket

  phenopackets/phenopacket-reference-implementation#84 · Filter by author pnrobinson opened on Nov 3, 2017
  1

• JsonGenerator.render java.lang.NoSuchMethodError

  phenopackets/phenopacket-reference-implementation#83 · Filter by author pnrobinson opened on Jul 27, 2017
  1

• Remove requirements for lists in setters

  enhancement
  phenopackets/phenopacket-reference-implementation#81 · Filter by author julesjacobsen opened on May 23, 2017
  

• Consider using Immutables library

  enhancement
  phenopackets/phenopacket-reference-implementation#80 · Filter by author julesjacobsen opened on May 23, 2017
  1

  

• disease should be a subclass of condition

  phenopackets/phenopacket-reference-implementation#79 · Filter by author cmungall opened on Oct 16, 2016

• Organism, Person -> Individual

  phenopackets/phenopacket-reference-implementation#78 · Filter by author cmungall opened on Oct 16, 2016
  

• Create carcinoma biosample example

  example
  phenopackets/phenopacket-reference-implementation#77 · Filter by author cmungall opened on Oct 16, 2016
  

• GPG artifact code signing should only be enabled in a release profile

  phenopackets/phenopacket-reference-implementation#71 · Filter by author heuermh opened on Jul 8, 2016
  1

• Add metadata for associations

  phenopackets/phenopacket-reference-implementation#69 · Filter by author cmungall opened on Jul 6, 2016
  4

• Add RO mappings into jsonld context file

  phenopackets/phenopacket-reference-implementation#66 · Filter by author cmungall opened on Jun 7, 2016

• Make an AbstractEntity base class for all Entities

  phenopackets/phenopacket-reference-implementation#58 · Filter by author julesjacobsen opened on May 17, 2016
  3

  

• Entity vs. ClassInstance

  question
  phenopackets/phenopacket-reference-implementation#56 · Filter by author selewis opened on May 10, 2016
  1

  

• Add developer docs describing design pattern

  phenopackets/phenopacket-reference-implementation#53 · Filter by author cmungall opened on Apr 14, 2016

• Consider adding a ClassInstance accessor for inferred_types

  phenopackets/phenopacket-reference-implementation#44 · Filter by author cmungall opened on Apr 1, 2016
  2

• Can null references be replaced with empty lists/strings and still not be written out?

  phenopackets/phenopacket-reference-implementation#40 · Filter by author julesjacobsen opened on Mar 29, 2016
  6

• PhenoPacket.java should go under model

  phenopackets/phenopacket-reference-implementation#34 · Filter by author cmungall opened on Mar 26, 2016
  1

• Should Environment have a TemporalRegion onset,offset and Severity?

  enhancement
  phenopackets/phenopacket-reference-implementation#30 · Filter by author julesjacobsen opened on Mar 23, 2016
  1

• Create a tutorial

  phenopackets/phenopacket-reference-implementation#28 · Filter by author cmungall opened on Mar 22, 2016

• Add a HPOA tab parser

  phenopackets/phenopacket-reference-implementation#27 · Filter by author cmungall opened on Mar 22, 2016
  10

• Make negatedTypes work with ClassInstance.Builder

  bug
  phenopackets/phenopacket-reference-implementation#24 · Filter by author julesjacobsen opened on Mar 22, 2016

• Generate visual display of OM

  phenopackets/phenopacket-reference-implementation#17 · Filter by author cmungall opened on Mar 11, 2016
  7

• Add javadocs

  phenopackets/phenopacket-reference-implementation#4 · Filter by author cmungall opened on Mar 7, 2016