Issues

• Protein-level entrapment for non-specific (HLA) searches: shuffled tryptic blocks recreate target peptides

  Noble-Lab/FDRBench#19 · Filter by author RomJ25 opened on Sep 25, 2026
  

• Follow-up question about PSM-level FDP calculation with the beta version

  help wanted
  Noble-Lab/FDRBench#18 · Filter by author lemeng-li opened on Aug 13, 2026
  1

• Processing DIA-NN output prior to FDP estimation

  DIA-NNFragPipequestion
  Noble-Lab/FDRBench#17 · Filter by author a-indra opened on Jul 29, 2026
  5

• Protein N-terminus setting

  Noble-Lab/FDRBench#16 · Filter by author julianu opened on Jun 9, 2026
  1

• Questions regarding peptide‑level evaluation, Percolator scores and fold settings in FDR_Bench

  FragPipe
  Noble-Lab/FDRBench#13 · Filter by author adrianmarman opened on Jun 3, 2026
  15