From abfe3ad0a08ec1244ab87b09bc4e3a797b5368dd Mon Sep 17 00:00:00 2001 From: Sahil Jhawar Date: Thu, 15 Oct 2026 11:29:16 +0200 Subject: [PATCH 1/2] Use hugging face to store test data --- .github/workflows/apptainer.yml | 11 +- .github/workflows/tests.yml | 11 +- README.md | 2 +- download_data_for_tests.sh | 14 +- pyproject.toml | 1 - uv.lock | 295 -------------------------------- 6 files changed, 19 insertions(+), 315 deletions(-) diff --git a/.github/workflows/apptainer.yml b/.github/workflows/apptainer.yml index c16d9a12..dfad9c75 100644 --- a/.github/workflows/apptainer.yml +++ b/.github/workflows/apptainer.yml @@ -43,12 +43,9 @@ jobs: with: python-version: "3.12" - - name: Resolve zenodo checksum for cache key - id: zenodo-record - run: | - DOI=$(grep -oP 'DOI="\K[^"]+' download_data_for_tests.sh) - uv run zenodo_get --doi "${DOI}" --md5 --output-dir /tmp/zenodo-md5 - echo "id=$(md5sum /tmp/zenodo-md5/md5sums.txt | cut -d' ' -f1)" >> "$GITHUB_OUTPUT" + - name: Resolve test data revision for cache key + id: test-data-revision + run: echo "id=$(grep -oP 'REVISION="\K[^"]+' download_data_for_tests.sh)" >> "$GITHUB_OUTPUT" - name: Cache test data id: cache-test-data @@ -62,7 +59,7 @@ jobs: tests/io/omni/data tests/io/RBMDataSet/data tests/io/solar_wind/data - key: zenodo-test-data-${{ steps.zenodo-record.outputs.id }} + key: hf-test-data-${{ steps.test-data-revision.outputs.id }} - name: Download test data if: steps.cache-test-data.outputs.cache-hit != 'true' diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 65befd0a..c5168130 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -66,12 +66,9 @@ jobs: uv sync --locked uv pip install coveralls coverage pytest-cov - - name: Resolve zenodo checksum for cache key - id: zenodo-record - run: | - DOI=$(grep -oP 'DOI="\K[^"]+' download_data_for_tests.sh) - uv run zenodo_get --doi "${DOI}" --md5 --output-dir /tmp/zenodo-md5 - echo "id=$(md5sum /tmp/zenodo-md5/md5sums.txt | cut -d' ' -f1)" >> "$GITHUB_OUTPUT" + - name: Resolve test data revision for cache key + id: test-data-revision + run: echo "id=$(grep -oP 'REVISION="\K[^"]+' download_data_for_tests.sh)" >> "$GITHUB_OUTPUT" - name: Cache test data id: cache-test-data @@ -85,7 +82,7 @@ jobs: tests/io/omni/data tests/io/RBMDataSet/data tests/io/solar_wind/data - key: zenodo-test-data-${{ steps.zenodo-record.outputs.id }} + key: hf-test-data-${{ steps.test-data-revision.outputs.id }} - name: Download test data if: steps.cache-test-data.outputs.cache-hit != 'true' diff --git a/README.md b/README.md index cf57049a..54acff30 100755 --- a/README.md +++ b/README.md @@ -128,4 +128,4 @@ All the above `uv` commands assume you have `uv` installed, if not then remove ` ## Test Data -The data used by the test suite is hosted on Zenodo and is not tracked in this repository. Install the `dev` dependency group (`uv sync --group dev`), which pulls in `zenodo_get`, then run `./download_data_for_tests.sh` to fetch and unpack it. +The data used by the test suite is hosted on Hugging Face ([spsw/SWVO-Test-Data](https://huggingface.co/datasets/spsw/SWVO-Test-Data)) and is not tracked in this repository. Run `./download_data_for_tests.sh` (requires `uv`) to fetch it into `tests/io`. diff --git a/download_data_for_tests.sh b/download_data_for_tests.sh index 8706233b..9d918b58 100755 --- a/download_data_for_tests.sh +++ b/download_data_for_tests.sh @@ -6,9 +6,15 @@ set -euo pipefail -DOI="10.5281/zenodo.22983305" +REPO="spsw/SWVO-Test-Data" +REVISION="ee8e705c77d4a80c3895f79466c0c47f3ee6c523" OUTPUT_DIR="." -uv run zenodo_get --doi "${DOI}" --output-dir "${OUTPUT_DIR}" -unzip -o "${OUTPUT_DIR}/swvo-test-data.zip" -d "${OUTPUT_DIR}" -rm "${OUTPUT_DIR}/swvo-test-data.zip" +uvx --from huggingface_hub hf download "${REPO}" --repo-type dataset --revision "${REVISION}" --local-dir "${OUTPUT_DIR}" + +# hf leaves its own bookkeeping behind in the output dir +rm -rf "${OUTPUT_DIR}/.cache" +rm -f "${OUTPUT_DIR}/.gitattributes" + +# Hugging Face cannot store empty directories +mkdir -p "${OUTPUT_DIR}/tests/io/kp/data/tmp" diff --git a/pyproject.toml b/pyproject.toml index d13b7715..f037a89c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -135,7 +135,6 @@ dev = [ "coverage>=7.14.0", "pytest>=9.0.2", "pytest-mock>=3.15.1", - 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name: Set up Python - run: uv python install + run: uv python install 3.12 - name: Install project and ty run: |